Re: [Open Babel] aromaticity detection

2012-02-22 Thread Miguel Quirós Olozábal
El mié, 22-02-2012 a las 11:16 -0500, Geoffrey Hutchison escribió: > > Im asking because I am using CDK and OpenBabel, and I am suffering of > > interoperability problems, because both tools have different ways of > > defining aromaticity. > > There is no unified aromaticity model in chemistry. I'

Re: [Open Babel] aromaticity detection

2012-02-22 Thread Eric Jang
This is somewhat unrelated but I found that CDK has a well-documented aromaticity algorithm. You could try looking at that before examining Open Babel's implementation. They might be similar. On Wed, Feb 22, 2012 at 8:16 AM, Geoffrey Hutchison < ge...@geoffhutchison.net> wrote: > > Im asking be

Re: [Open Babel] aromaticity detection

2012-02-22 Thread Geoffrey Hutchison
> Im asking because I am using CDK and OpenBabel, and I am suffering of > interoperability problems, because both tools have different ways of > defining aromaticity. There is no unified aromaticity model in chemistry. I'm not sure the aromaticity algorithm in Open Babel is publishable, and even