> as an example you use this file (silica glass SiO2 with 3000 atoms in PDB
> format, written using Babel):
...
> Is this the reason why it is so slow for this kind of coordinates is because
> Babel looking for bonds ?
My guess, based on your example, is ring / aromaticity perception.
In PDB,
Hi Sébastien,
in principle you can disable the perception of connectivity, among other things, by using
OBMol.BeginModify() (but somebody with more experience than me should confirm it). From
the documentation[1]:
"Call when making many modifications -- clears conformer/rotomer data. The
> I'm on a mac running 10.13.1 and I installed openbabel using homebrew.
I’d ask the Homebrew folks, but my guess is that you’re either not using the
right python:
% which python
Or, Homebrew is installing the Open Babel python packages into a directory that
you’ll need to add to your Python
Hello, I'm an inexperienced user here and having some problems with
importing pybel. When importing pybel I get the following error:
Traceback (most recent call last):
File "", line 1, in
ImportError: No module named pybel
I'm on a mac running 10.13.1 and I installed openbabel using
