Re: [Open Babel] How to run readstring in pybel?

2017-05-07 Thread Peng Yu
tall pybel`, which is the >>> "wrong" pybel (https://pypi.python.org/pypi/PyBEL/0.5.4 ) You should install >>> openbabel and use it's pthon wrapper via `pip install openbabel` >>> (https://pypi.python.org/pypi/openbabel/2.4.1 ). >>> >>>

Re: [Open Babel] How to run readstring in pybel?

2017-05-07 Thread David Hall
rg/pypi/openbabel/2.4.1 ). >> >> ________________ >> Hongbin Yang >> >> >> From: Peng Yu >> Date: 2017-05-08 09:07 >> To: openbabel-discuss >> Subject: [Open Babel] How to run readstring in pybel? >> Hi, I got the

Re: [Open Babel] How to run readstring in pybel?

2017-05-07 Thread Peng Yu
ttps://pypi.python.org/pypi/openbabel/2.4.1 ). > > > Hongbin Yang > > > From: Peng Yu > Date: 2017-05-08 09:07 > To: openbabel-discuss > Subject: [Open Babel] How to run readstring in pybel? > Hi, I got the following error. Does anyb

Re: [Open Babel] How to run readstring in pybel?

2017-05-07 Thread Hongbin Yang
ngbin Yang   From: Peng YuDate: 2017-05-08 09:07To: openbabel-discussSubject: [Open Babel] How to run readstring in pybel?Hi, I got the following error. Does anybody know what is wrong? Thanks.   $ cat main.py #!/usr/bin/env python   import pybel mymol = pybel.readstring("smi", "