I have issues with OpenBabel in Python3.6 - I found an older topic. But the
solution suggested by Neil is not working. Please help.
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Thank you so much David for the hint.
Now I checked the path of python3 by "which python3" and it gave me the path
"/Library/Frameworks/Python.framework/Versions/3.5/bin/python3"
Then I changed the command to:
*cmake ../
My guess is that your python3 is not at /usr/bin/python3 . Are you sure it
isn't at /usr/local/bin/python3 ? Based on your Python.framework
information, that would seem to be likely where it is.
On that note, we should consider printing an error if the detected version
of python is 1.4 ; that
Hi David,
Can you please suggest me a solution? I am trying it for the last two weeks
but could not find a solution. I even posted a thread at this forum but
could not solve the problem.
Now as your directions, I downloaded the openbabel from git:
https://github.com/openbabel/openbabel
And then
Thanks ... it worked like a charm. Infact conda was the first thing I had
tried, not sure why it didn't work first time.
Best,
Sanjan
On Wed, Nov 30, 2016 at 7:42 AM, mwojcikowski [via Open Babel] <
ml-node+s957263n4659623...@n4.nabble.com> wrote:
> Hi Sanjan,
>
> Since you've already have
Hi,
I have been trying install python bindings for openbabel 2.4.1 on
Ubunut16.04 with python 3.5.2 (installed via Anaconda) but haven't been able
to get it working. Here's what I have tried so far:
Based on David Hall's post in this thread:
$ git clone
I thought I had, but apparently not, because after I installed it
everything worked.
Thanks for the help,
John
On 08/09/2016 01:05 PM, David Hall wrote:
do you have python3-dev installed?
On Aug 9, 2016, at 12:57 PM, John >
do you have python3-dev installed?
> On Aug 9, 2016, at 12:57 PM, John wrote:
>
> PYTHON_INCLUDE_DIR:PATH=/usr/include/python2.7
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If you use the version of openbabel from git (which I would recommend over
for the 2.3.2 release), then you can just specify PYTHON_EXECUTABLE as the
python3 and it should find everything correctly.
$ git clone https://github.com/openbabel/openbabel.git
$ cd openbabel
$ mkdir build
$ cd build
$
Please don't reply to me directly. Many other people on the mailing list can
answer your question.
Your problem is clear from the WARNING. You want something like
-DPYTHON_LIBRARY=/usr/lib/python3.4/libpython.so
You need to link to a *file* not a directory where the file is found.
Hope that
> I am fairly new at Python, and am trying to stick to the latest version.
> Is it possible to install the Open Babel bindings for Python 3?
Yes. I don't know about the pip packages (or Mint ones) but you can do this
from source, e.g.:
Hello, thank you for your development and publication of the Python
bindings for Open Babel.
I am fairly new at Python, and am trying to stick to the latest version.
Is it possible to install the Open Babel bindings for Python 3? I've
looked at the OpenBabel.org and PyPI website descriptions
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