Re: [Paraview] macOS DMG file problems

[Shawn Waldon]

Hi Michael,

I just tried here and I can open ParaView-5.5.2-Qt5-MPI-OSX10.8-64bit.dmg
(downloaded from the ParaView website) on my 10.11 (El Capitan) machine.
Also, the machine that makes the unsigned dmgs is only 10.12 so it
shouldn't default to APFS.  I'm not sure about the machine used to sign the
signed binaries though.

Shawn

On Mon, Jul 9, 2018 at 10:55 AM, Michael Jackson <
mike.jack...@bluequartz.net> wrote:

> I am having problems mounting the disk imgae (.dmg file) from the latest
> ParaView 5.5.2 release on systems older than 10.13 (high sierra). Is it
> possible that the disk image format was APFS instead of HFS+?
>
>
>
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Re: [Paraview] [ANNOUNCE] ParaView 5.5.0 now available for download

[Shawn Waldon]

Hi Kazuyoshi,

I'm not sure we ever tested running make install with
BUILD_DOCUMENTATION=ON.  Our documentation builds rsync the generated html
documentation from the build directory.  And unless you want to build the
html documentation locally you should just be able to turn off that option
and it will work.


HTH,
Shawn

On Wed, Apr 11, 2018 at 4:06 AM, Kazuyoshi Furutaka <
furutaka.kazuyo...@jaea.go.jp> wrote:

> Hi,
>
> The build from the source (checked out from a clone git repo.)
> was OK. (on linux, fedora-27, x86_64, gcc 7.3.1 20180303 (Red Hat 7.3.1-5))
> CMake options:
>   set(PARAVIEW_ENABLE_PYTHON ON  CACHE BOOL "")
>   set(BUILD_DOCUMENTATIONON  CACHE BOOL "")
>   set(BUILD_EXAMPLES ON  CACHE BOOL "")
>   set(BUILD_TESTING  OFF CACHE BOOL "")
>
> But the installation failed...
> Indeed, there's no INSTALL file both in build and git directories...
>
> What's wrong with my build?
>
> Kazuyoshi
>
> (the following is the last lines of the output during the installation)
> -- Installing: /usr/local/HDF_Group/HDF5/1.10.1/share/doc/paraview-5.5/
> doxygen/doc_cleanhtml.pl
> -- Installing: /usr/local/HDF_Group/HDF5/1.10.1/share/doc/paraview-5.5/
> doxygen/doc_codematch.pl
> -- Installing: /usr/local/HDF_Group/HDF5/1.10.1/share/doc/paraview-5.5/
> doxygen/doc_contributors.pl
> -- Installing: /usr/local/HDF_Group/HDF5/1.10.1/share/doc/paraview-5.5/
> doxygen/doc_header2doxygen.pl
> -- Installing: /usr/local/HDF_Group/HDF5/1.10.1/share/doc/paraview-5.5/
> doxygen/doc_index.pl
> -- Installing: /usr/local/HDF_Group/HDF5/1.10.1/share/doc/paraview-5.5/
> doxygen/doc_rmpath.pl
> -- Installing: /usr/local/HDF_Group/HDF5/1.10.1/share/doc/paraview-5.5/
> doxygen/doc_version.pl
> -- Installing: /usr/local/HDF_Group/HDF5/1.10.1/share/doc/paraview-5.5/
> doxygen/doc_index.stop
> -- Installing: /usr/local/HDF_Group/HDF5/1.10.1/share/doc/paraview-5.5/
> doxygen/doc_readme.txt
> CMake Error at VTK/Utilities/Doxygen/cmake_install.cmake:70 (file):
>   file INSTALL cannot find
>   "/home/furutaka/work/ParaView/ParaView-bld-v5.5.0/VTK/
> Utilities/Doxygen/doc/html".
> Call Stack (most recent call first):
>   VTK/cmake_install.cmake:215 (include)
>   cmake_install.cmake:99 (include)
>
>
> make: *** [Makefile:140: install] Error 1
>
> --
> Kazuyoshi Furutaka
> furutaka _dot_ kazuyoshi _at_ jaea _dot_ go _dot_ jp
>
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Re: [Paraview] Fwd: Missing *Hierarchy files in Plugins

[Shawn Waldon]

Hi Alexander,

There is an easy workaround as long as you don't care about the
AnalyzeNIfTIIO plugin: just disable the plugin (set the CMake option
PARAVIEW_BUILD_PLUGIN_AnalyzeNIfTIIO to OFF).

If you do care about the file formats that that plugin enables, then
someone will need to do some more debugging on this.  Can you provide more
details about which CMake options you are enabling?

HTH,
Shawn

[1]: https://gitlab.kitware.com/paraview/paraview/issues

On Fri, Mar 30, 2018 at 1:59 PM, Alexander Lindsay  wrote:

> Hi, when building paraview from source with either `make` or `ninja` I run
> into the following type of error:
>
> ninja: error: '../Plugins/AnalyzeNIfTIReaderWriter/AnalyzeNIfTIIOHierarchy',
> needed by 'Plugins/AnalyzeNIfTIReaderWriter/vtkAnalyzeReaderClientServer.cxx',
> missing and no known rule to make it
>
> Sure enough this file doesn't exist. I am currently on the master branch,
> building on Ubuntu 16.04. I'm guessing/hoping there's an easy fix to
> this...?
>
> Alex
>
>
>
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Re: [Paraview] Paraview crashing when clipping an openfoam solution

[Shawn Waldon]

Hi Carlos,

That error message means that an exception was thrown from a Qt event
handler.  The message about reimplementing QApplication::notify() is just
to tell you how to catch the exception if you wanted to.  The real problem
is the exception.

A std::bad_alloc exception happens when the program tries to allocate
memory and fails.  So you need to figure out why you are running out of
memory (that is the most likely cause of the error).

HTH,
Shawn

On Mon, Mar 26, 2018 at 10:47 AM, Carlos E Manglano-Villamarin <
carlosemangla...@gmail.com> wrote:

> Hi everyone!
>
> When I postprocess some simulations, less than 900,000 cells, from
> openfoam, either opening paraview directly or using the parafoam tool, the
> program crashes giving me the following error message:
>
> I/O: uncollated
> terminate called after throwing an instance of 'std::bad_alloc'
>   what():  std::bad_alloc
> Qt has caught an exception thrown from an event handler. Throwing
> exceptions from an event handler is not supported in Qt. You must
> reimplement QApplication::notify() and catch all exceptions there.
>
> My OS is Ubuntu 16.04, freshly installed. I was getting the same error
> with Ubuntu 17.10 which I had installed until last night.
>
> I am looking for info about "reimplementing QApplication" with no luck.
>
> Any suggestions, please?
> Carlos
>
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Re: [Paraview] importing paraview.simple without overriding numpy

[Shawn Waldon]

On Fri, Mar 16, 2018 at 12:24 PM, Miguel Arriaga 
wrote:

> Thanks Shawn,
> I was just wondering, would it be possible for the developers to change
> the location of the paraview module such that adding the location of the
> module to the python path would not import all other site-packages? Maybe
> I'm missing something, but it seems to me that this way we would be able to
> avoid these issues.
>
>
Forwarding to the list since I don't make these decisions.  For what it is
worth, I feel like it increases the maintenance burden on the developers
too much for a niche use case.

Please keep the mailing list in the CC.

Shawn
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Re: [Paraview] importing paraview.simple without overriding numpy

[Shawn Waldon]

Hi Miguel,

You could try adding the location of your numpy 1.13.1 before paraview's
site-packages in your PYTHONPATH to ensure it searches there first.  I
don't think we compile against numpy, so there shouldn't be symbol errors
with using a different version.

HTH,
Shawn

On Fri, Mar 16, 2018 at 12:00 PM, Miguel Arriaga 
wrote:

> Hi,
> I'm trying to import paraview.simple and numpy in a python script.
>
> The issue is that, when I add the "site-packages" path to my PYTHONPATH,
> numpy is imported from paraview and not from my system. If I check the
> version of numpy I get 1.8.1 instead of the 1.13.1 that I have.
>
> Is there anything I can do to resolve this?
>
> Best regards,
> Miguel
>
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Re: [Paraview] Help with ProgrammableFilter and PATH problem in 5.4.1

[Shawn Waldon]

Hi Martin,

My first guess would be that your state file is trying to load data that
isn't there.  Then when you run your programmable filter inputs[0] is None
and you get this error message.  I can't think of anything else that could
be going wrong with that script, especially since it works on one of your
machines.

HTH,
Shawn

On Tue, Mar 6, 2018 at 6:16 PM, Martin Weinberg  wrote:

> I have two nearly identical machine running Ubuntu 17.10.  The both have
> the latest stable Paraview 5.4.1 from the download page installed in /opt.
>
> I wrote a wrapper script like this:
>
> 
> 
>
> #!/bin/bash
>
> # PVHOME=/opt/ParaView-5.4.1-822-g597adef-Qt5-MPI-Linux-64bit
> PVHOME=/opt/ParaView-5.4.1-Qt5-OpenGL2-MPI-Linux-64bit
>
> export PATH=$PVHOME/bin
> export LD_LIBRARY_PATH=$PVHOME/lib/
> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$PVHOME/lib/paraview-5.4/
> export PYTHONPATH=$PVHOME/lib/python2.7/bin/
> export PYTHONPATH=$PYTHONPATH:$PVHOME/lib/python2.7/site-packages/
> export PYTHONPATH=$PYTHONPATH:$PVHOME/lib/python2.7/site-packages/vtk/
> export PYTHONPATH=$PYTHONPATH:$PVHOME/lib/python2.7/site-
> packages/paraview/
>
> $PVHOME/bin/paraview
> 
> 
>
> On each machine I start paraview and load a state that has a
> programmable filter with the line:
>
> d0 = inputs[0].PointSet['d']
>
> One one machine, this works just fine.  On the other machine, I get the
> following message in the Output:
>
> 
> 
>
> Traceback (most recent call last): File "", line 24, in File "", line 2,
> in RequestData TypeError: 'NoneType' object has no attribute '__getitem__'
>
> BTW, this is just a test; obviously, my real filter does something.
>
> I assume that some module is not being loaded here, but I've tried
> _everything_ I could think of and I'm not making progress.  Any ideas??
>
> --
> Martin Weinberg
> 6 Grass Hill Rd
> West Whately, MA
> 010039
>
>
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