Re: [petsc-users] Scaling/Preconditioners for Poisson equation

2014-09-30 Thread Filippo Leonardi
Thank you everybody, number of iterations seems now to be under control, I'll run some scaling test and hope for the best. On Monday 29 September 2014 16:02:24 Jed Brown wrote: Matthew Knepley knep...@gmail.com writes: Matrix free you mean AMG (like -pc_mg_galerkin)? Does it reach the same

Re: [petsc-users] Scaling/Preconditioners for Poisson equation

2014-09-30 Thread Barry Smith
http://lmgtfy.com/?q=HPGMG On Sep 30, 2014, at 1:59 AM, Filippo Leonardi filippo.leona...@sam.math.ethz.ch wrote: Thank you everybody, number of iterations seems now to be under control, I'll run some scaling test and hope for the best. Now I am intrigued, is there, by any chance, any

[petsc-users] Spain V.S. USA--Developing CSP projects in South Africa

2014-09-30 Thread Ms . Ella Wei
If the message does not display properly, pleaseClick HereHi,Spain and USA, the leading two CSP markets are running the biggest number of CSP plants, and generating quite a

[petsc-users] MKL Pardiso with MPI

2014-09-30 Thread Baros Vladimir
Hi, Intel released MKL 11.2 with support for Pardiso cluster version. https://software.intel.com/en-us/articles/intel-math-kernel-library-parallel-direct-sparse-solver-for-clusters Is it possible to use Pardiso with PETSC using MPI? I'm on Windows if that matters. Currently if I try to run, I

Re: [petsc-users] MKL Pardiso with MPI

2014-09-30 Thread Patrick Sanan
You should include make.log and configure.log (to answer the question of whether you configured with --download-mkl_pardiso, amongst others) . On 9/30/14 12:03 PM, Baros Vladimir wrote: Hi, Intel released MKL 11.2 with support for Pardiso cluster version.

[petsc-users] PETSc and MPE

2014-09-30 Thread Matthew Hills
Hi PETSc team, I'm attempting to analyze and optimize a structural analysis program called SESKA using mpe. I have configured PETSc with: ./configure --with-mpi=1 --with-cc=gcc --with-cxx=g++ --with-fc=gfortran

Re: [petsc-users] PETSc and MPE

2014-09-30 Thread Barry Smith
Send configure.log and make.log On Sep 30, 2014, at 6:49 AM, Matthew Hills hillsma...@outlook.com wrote: Hi PETSc team, I'm attempting to analyze and optimize a structural analysis program called SESKA using mpe. I have configured PETSc with: ./configure --with-mpi=1 --with-cc=gcc

Re: [petsc-users] PETSc and MPE

2014-09-30 Thread Satish Balay
This hasn't been tested in a while - but I think you have to configur with: --download-mpe And then run the code with: -log_mpe Satish On Tue, 30 Sep 2014, Matthew Hills wrote: Hi PETSc team, I'm attempting to analyze and optimize a structural analysis program called SESKA using mpe. I

Re: [petsc-users] DMPlex with spring elements

2014-09-30 Thread Matthew Knepley
On Mon, Sep 29, 2014 at 4:55 PM, Miguel Angel Salazar de Troya salazardetr...@gmail.com wrote: Hi all I'm bumping this post because I have more questions related to the same problem. I am looping over the edges of my DMNetwork, then I obtain the vertices that make up each edge with

Re: [petsc-users] DMPlex with spring elements

2014-09-30 Thread Abhyankar, Shrirang G.
From: Miguel Angel Salazar de Troya salazardetr...@gmail.com Date: Mon, 29 Sep 2014 16:55:14 -0500 To: Shri abhy...@mcs.anl.gov Cc: petsc-users@mcs.anl.gov petsc-users@mcs.anl.gov Subject: Re: [petsc-users] DMPlex with spring elements Hi all I'm bumping this post because I have more

Re: [petsc-users] DMPlex with spring elements

2014-09-30 Thread Matthew Knepley
On Tue, Sep 30, 2014 at 11:22 AM, Abhyankar, Shrirang G. abhy...@mcs.anl.gov wrote: From: Miguel Angel Salazar de Troya salazardetr...@gmail.com Date: Mon, 29 Sep 2014 16:55:14 -0500 To: Shri abhy...@mcs.anl.gov Cc: petsc-users@mcs.anl.gov petsc-users@mcs.anl.gov Subject: Re:

Re: [petsc-users] DMPlex with spring elements

2014-09-30 Thread Miguel Angel Salazar de Troya
No worries. Thanks for your responses. I'm assuming you suggested to use DMNetworkIsGhostVertex() and not modify its value for the case in which I were using the global vectors and not the local vectors, where it is possible, as Matt suggested. Miguel On Tue, Sep 30, 2014 at 11:22 AM, Abhyankar,

Re: [petsc-users] DMPlex with spring elements

2014-09-30 Thread Abhyankar, Shrirang G.
My reply was based on the assumption that the values set at a vertex do not have contributions from other vertices or edges. In which case, you would not want to set any value for the ghost vertex. For example, consider the following network v1e1 v2e2 v3 |

Re: [petsc-users] PETSc and MPE

2014-09-30 Thread Matthew Hills
Thanks a mil, it worked perfectly. Matt Sent from Windows Mail From: Satish Balay Sent: ‎Tuesday‎, ‎30‎ ‎September‎ ‎2014 ‎15‎:‎06 To: Matthew Hills Cc: petsc-users@mcs.anl.gov, Sebastian Skatulla This hasn't been tested in a while - but I think you have to configur with:

[petsc-users] Allocating memory for off-diagonal matrix blocks when using DMComposite

2014-09-30 Thread Gautam Bisht
Hi, The comment on line 419 of SNES ex 28.c http://www.mcs.anl.gov/petsc/petsc-current/src/snes/examples/tutorials/ex28.c.html says that the approach used in this example is not the best way to allocate off-diagonal blocks. Is there an example that shows a better way off allocating memory for

Re: [petsc-users] Allocating memory for off-diagonal matrix blocks when using DMComposite

2014-09-30 Thread Jed Brown
Gautam Bisht gbi...@lbl.gov writes: Hi, The comment on line 419 of SNES ex 28.c http://www.mcs.anl.gov/petsc/petsc-current/src/snes/examples/tutorials/ex28.c.html says that the approach used in this example is not the best way to allocate off-diagonal blocks. Is there an example that shows

Re: [petsc-users] What is You must specify a path for MPI with --with-mpi-dir=directory

2014-09-30 Thread Barry Smith
Do not use any of these options -download-mpicc=1 –download-f2cblaslapack=1 –download-f-blas-lapack=1 Send the resulting configure.log again if it fails. Also we recommend installing the latest version of PETSc instead of this old one. Barry On Sep 30, 2014, at 6:20 PM, Nan

[petsc-users] How to use

2014-09-30 Thread Sharp Stone
Hi all, I have four differential equations to be solved with a linear sparse matrix system that has the form of (mat)A dot (vec)X = (vec)B. For each node, I have dof=4. I found few tutorials or examples on the KSPSolve with dof1, and I do know it's possible to solve this problem with Petsc. Are

Re: [petsc-users] How to use

2014-09-30 Thread Matthew Knepley
On Tue, Sep 30, 2014 at 9:13 PM, Sharp Stone thron...@gmail.com wrote: Hi all, I have four differential equations to be solved with a linear sparse matrix system that has the form of (mat)A dot (vec)X = (vec)B. For each node, I have dof=4. I found few tutorials or examples on the KSPSolve