Re: [petsc-users] DMPlex memory problem in scaling test

2019-10-10 Thread Danyang Su via petsc-users
Hi Matt, My previous test is terminated after calling subroutine A as shown below. >> In Subroutine A   call DMPlexDistribute(dmda_flow%da,stencil_width,    &     PETSC_NULL_SF,distributedMesh,ierr)   CHKERRQ(ierr)   if (distributedMesh /=

Re: [petsc-users] Makefile change for PETSc3.12.0???

2019-10-02 Thread Danyang Su via petsc-users
On 2019-10-02 11:00 a.m., Balay, Satish wrote: Can you retry with this fix: https://gitlab.com/petsc/petsc/commit/3ae65d51d08dba2e118033664acfd64a46c9bf1d [You can use maint branch for it] Satish This works. Thanks. Danyang On Wed, 2 Oct 2019, Danyang Su via petsc-users wrote: Dear

Re: [petsc-users] Error running configure on SOWING

2019-09-10 Thread Danyang Su via petsc-users
: Please send the configure.log file when run with --download-sowing-cc=yourCcompiler and also $PETSC_ARCH/externalpackages/git.sowing/config.log this will tell us why it is rejecting the C compiler. Barry On Sep 10, 2019, at 12:43 PM, Danyang Su via petsc-users wrote: Dea

[petsc-users] Error in creating compressed data using HDF5

2019-09-02 Thread Danyang Su via petsc-users
Dear All, Not sure if this is the right place to ask hdf5 question. I installed hdf5 through PETSc configuration --download-hdf5=yes. The code runs without problem except the function to create compressed data (red part shown below).     !c create local memory space and hyperslab     call

Re: [petsc-users] different dof in DMDA creating

2019-08-15 Thread Danyang Su via petsc-users
and regards, Danyang On 2019-02-07 1:53 p.m., Danyang Su wrote: Thanks, Barry. DMPlex also works for my code. Danyang On 2019-02-07 1:14 p.m., Smith, Barry F. wrote:    No, you would need to use the more flexible DMPlex On Feb 7, 2019, at 3:04 PM, Danyang Su via petsc-users wrote: Dear

[petsc-users] Strange compiling error in DMPlexDistribute after updating PETSc to V3.11.0

2019-04-05 Thread Danyang Su via petsc-users
Hi All, I got a strange error in calling DMPlexDistribute after updating PETSc to V3.11.0. There sounds no change in the interface of DMPlexDistribute as documented in https://www.mcs.anl.gov/petsc/petsc-3.10/docs/manualpages/DMPLEX/DMPlexDistribute.html#DMPlexDistribute

Re: [petsc-users] Installation error on macOS Mojave using GNU compiler

2019-01-04 Thread Danyang Su via petsc-users
On 2019-01-03, 4:59 PM, "Balay, Satish" wrote: On Thu, 3 Jan 2019, Matthew Knepley via petsc-users wrote: > On Thu, Jan 3, 2019 at 7:02 PM Danyang Su via petsc-users < > petsc-users@mcs.anl.gov> wrote: > > > Hi All, > >

Re: [petsc-users] [petsc-maint] Fwd: DMPlex global to natural problem using DmPlexGetVertexNumbering or DMPlexGlobalToNatural

2018-11-29 Thread Danyang Su via petsc-users
On 18-11-29 06:13 PM, Matthew Knepley wrote: On Thu, Nov 29, 2018 at 7:40 PM Danyang Su via petsc-maint mailto:petsc-ma...@mcs.anl.gov>> wrote: Dear PETSc developers & users, Sorry to bother you again. I just encounter some difficulties in DMPlex global to natural order. This