(I've recently added protogen to the download section, here):
http://code.google.com/p/protobuf-net/
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Re point 1: no, you don't.
To illustrate, protobuf-net's protogen actually re-writes the
descriptor as xml. If you want, you can use this "as is", just add a
new xslt and you're done:
protogen -i:foo.proto -o:bar.whatever -t:yourlanguage
Or if you want them as xml, this already exists: