On Fri, Oct 17, 2003 at 09:41:24AM -0700, Warren L. DeLano wrote:
> > Truls A. Tangstad wrote:
> > I'm very interested in using alot of the functionality that PyMol
> > offers programmatically from Python, i.e. without using a GUI at
> > all. The chempy package seems to cover alot of my needs, load
How do I know what the segids are? How do I create segids?
Thanks,
Jon
- Original Message -
From: "Nat Echols"
To: "Jonathan Ostrem"
Cc: "PyMol User Group"
Sent: Friday, October 17, 2003 12:08 AM
Subject: Re: [PyMOL] Segment Identifiers
>
> if 'foo' is the segid of your kinase,
>
>
I just started to get this error mac-osx 10.2.6. Could it be
correlated with a recent installation of the python-based molecular
visualization programs from the MGL at Scripps. I have reinstalled
the program and I get the same error.
Traceback (most recent call last):
File "/Applications/P
Wataru,
I would tend to go with the 9800 if cost is not an issue -- it is a
faster card than the 9600. Both work great with flat panels (though
you'll need a CRT for stereo).
Also, I've found that the 9600 does not support antialiased lines on the
G5, much to my disappointment. I do now know wh
If you've got PyMOL configured to open on
import pymol
pymol.finish_launching()
You can suppress the GUI feature and suppress startup output by
providing command line arguments as follows. Before importing PyMOL,
set a "pymol_argv" list in the __main__ namespace. PyMOL will interpret
this as a
I'm very interested in using alot of the functionality that PyMol
offers programmatically from Python, i.e. without using a GUI at
all. The chempy package seems to cover alot of my needs, loading
different file formats etc. even though it doesn't seem to be
documented.
Is it also possible to use t
Dear staff (and pymol users):
I am looking for some suggestions on the power mac G5 hardware to run
pymol and other 3D applications without problems.
Between the two graphic cards offered by Apple (ATI Radeon 9600 pro or
9800 pro), which do you recommend? Is it too risky to buy the 9800 pro
b
if 'foo' is the segid of your kinase,
PyMOL> select kinase, segi foo
PyMOL> color green, segi foo
it doesn't seem to care about any leading or lagging spaces, as far as I
can tell.
On Thu, 16 Oct 2003, Jonathan Ostrem wrote:
> How are segment identifiers used. I have a PDB file with a kinase
