RE: [PyMOL] Rtools Question

2004-05-24 Thread Warren DeLano
Hi Tony Friends, I just wanted to draw your attention to the fact that rTools should (in theory) work with the 0.95 OSX-X11 hybrid version, which has an native Aqua-based OpenGL window and an X11-based Tcl/Tk gui. I specifically created that version to insure that Mac users wouldn't be

Re: [PyMOL] 3d plotting in pymol

2004-05-24 Thread Tsjerk Wassenaar
Hi Amit (and other users), Here's a script which can be used to put marks on the positions of every atom in a selection. There are several types of marks included now, e.g. cube, rhombic dodecahedron, tetrahedron, plus and star. Using a matrix operator these can be extended a bit, to 2D

RE: [PyMOL] 3d plotting in pymol

2004-05-24 Thread Amit Chourasia
Tsjerk, Thanks for providing the script. I was going through the code. It seems to have a a lot of potential for easy expansion. I am not able to use it though. Could you please provide a little descriptive documentation for using this. --Amit -Original Message- From: Tsjerk

RE: [PyMOL] 3d plotting in pymol

2004-05-24 Thread Amit Chourasia
Tsjerk, This is what I tried 1) load a small pdb files (10 atoms) 2) run graph.py 3) graph all, star, 1, 0.10,[1,0,0], [0,0,1],[[1,0,0],[0,1,0],[0,0,1]], graph This is what I am getting * Traceback (most recent call last): File C:\Program