Hey Andrew,
On my system, open launches Graphic Converter. In any case, I have an
alias defined in ~/.bashrc to start pymol:
alias pymol='/Applications/PyMOLX11Hybrid.app/Contents/MacOS/PyMOL'
This way, pymol test.pdb opens the pdb file in pymol, and the path is set
correctly.
Andreas
I
Hi,
I have work a little with .obj file.
I've written a script that translates OBJ file to PDB file. It is quite simple
to make the opposite.
For more information on obj format, you can read this resume:
http://www.fileformat.info/format/wavefrontobj/
You can also translate PyMOL CGO to OBJ
Hi all!
I am trying to open a SHARP map (ccp4 format, i.e. .map format), but it
does not open the map. According to the pymol users manual, it should open
ccp4 format maps. Has anyone had this problem before, and what can I do to
get around it?
Thanks!
Sivaram Mylavarapu.
Hi everybody.
I'm currently trying to create a pop-up GUI with Radiobuttons (e.g.
checkboxes). I don't know why initial highlighting of a specific Checkbox
won't work. Attribute .set() fails at this point (see below), although
the GUI looks nice.
from Tkinter import *
root = Tk()
def
This brings up an minor issue I have with the way PyMOL deals with maps. As
Sivaram has found out, file extension matters a lot in PyMOL. So if I have a
normal ccp4-format map with the extension '.ccp4', PyMOL is happy and will
display the map normally. However, if the extension is something
Hi all,
After manually docking a molecule to another molecule (from a different
.pdb file), is it possible to write out the coordinates of the moved and
docked molecule with it's 'new' coordinates relative to the .pdb to
which it was docked?
Marilyn
Marilyn D. Yoder
Division of Cell Biology
Thank you Jerome.
Do you know of any way to convert from .pov to any of the listed formats? More
to the point, we're looking for an easy way to import molecules/surfaces/maps
from pymol into our lab copy of 3D Studio, mostly for lighting effects
(tinted-, omnidirectional-, volume-,
Hello PYMOL users,
I have problem when maximalizing PYMOL Viewer window. The window becomes black
:(. I have never had this problem until I had to repair installation of Windows
XP due to failure during installation of Servis Pack2. I managed to reinstall
Windows XP and to install Servis Pack
