pymol-users-boun...@lists.sourceforge.net wrote on 03/03/2007 12:40:13 AM:
Hello,
Where can I find information about the sequence viewer? I would like to
know more about the red zeros, etc.
--Kevin
Hi Kevin -
I'm not sure of the best source of info for the sequence viewer, but the
On 3/3/07, se...@uniroma2.it se...@uniroma2.it wrote:
Dear all,
I'm new to this list and to the software.
I used PyMOL and APBS to calculate an electrostatic surface for a
small protein (I'm using the WindowsXP version) and everything seems fine.
Now I would like to visualize this surface AND
Dear list,
Has anyone else noticed problems with some selection wildcards in 0.99rev8? I can still do things like delete thingy_*
to delete the models thingy_001, thingy_002, etc. But when I try things like color nitrogen, name N* nothing happens.
I can do color nitrogen, name N+, but that only
Jacob,
Are you looking at a nucleic acid structure perhaps? PyMOL automatically
disables the asterisk wildcard for atom names in PDB structures read which
contain asterisks in the atom name field (as do many NA structures...).
To restore it,
unset atom_name_wildcard, object-name
But then
My 2 cents' worth:
How about skipping over the ancient and limiting WRL format and adopt a
cross-platform solution.
For example, Collada is gaining momentum in the 3D community
(https://collada.org/public_forum/welcome.php) and provides an open
standard digital asset schema for interactive 3D
Dear PyMOL users,
I am a newcomer to this list and largely to PyMOL. I have a lot of
experience with Jmol since my work is oriented toward publishing on
the web.
I would like to be able to generate surface MEP coloring in PyMOL for
proteins. I'm on Mac OSX 10.4, and I've
Frieda,
We too have experienced problems ourselves attempting to install X11 on
Macintosh computers that have been patched since the original Mac OS X
install. The only sure fix we know of is to do a clean OS install from the
original CD, being sure to select the X11 option, which is not
