[PyMOL] arrow objects

2007-09-13 Thread Gianluca Santarossa
Dear all, I would like to add a number of arrows inside a picture connecting for example two atoms. I have some troubles because I did not find a CONE primitive to add at the end of a cylinder. Is there any available code for doing that? Moreover, I don't clearly understand how I can get the c

Re: [PyMOL] Keyword in PDB to display a string in the viewer

2007-09-13 Thread DeLano Scientific
For safety & security reasons, it probaby isn't such a good idea to put code into PDB files. Fortunately, we have something called a .p1m file which provides for the reverse: embedding of PDB and other data files within a script. There are three such examples (embed0X.p1m) in the test/dat fold

[PyMOL] Keyword in PDB to display a string in the viewer

2007-09-13 Thread mathieu Coincon
Hi, I would like to know if there is a way to put a keyword in my pdb file in order to display a string in the viewer. Something like: MODEL1 REMARK ="This is model 1" ATOM . . ATOM. ENDMDL MODEL2 REMARK ="This is model 2" ATOM . . ATOM. ENDMDL In

Re: [PyMOL] Doubts regarding command line argument in pymol

2007-09-13 Thread Gianluca Santarossa
Nagarajan wrote: Hello all, I am having some doubts in command line argument in pymol. Can anyone tell me the command to change the background to white using command line..! I can use it in a movie script. cmd.bg_color('white') For running commands in a pymol script (which means running it