[PyMOL] problem with installation of pynmr

2010-05-21 Thread Goebl, Christoph (christoph.go...@uni-graz.at)
dear all, sorry for a maybe trivial question, but I am not able to solve this problem: I want to install PyNMR (0.37 for linux) to my Pymol (0.99 for linux). After installation I get the positive output: !! PYNMR install has completed. To run PYNMN, start up pymol, then open the NMR

[PyMOL] stick transparency

2010-05-21 Thread Ariel Talavera
Hi there, I am trying to set stick transparency using the following command: set stick_transparency, 0.5, peg_1, but with no success. The problem is with the selection, because if I use instead, set stick_transparency, 0.5, then every thing represented with stick get 50% transparent. Can you help

Re: [PyMOL] stick transparency

2010-05-21 Thread Matthew Franklin
(I'm putting this back on-list) That's too bad. It worked for me: PyMOL 1.2r2, Windows XP. Can you set other properties of this object: color, stick_radius, etc.? - Matt -- Matthew Franklin , Ph.D. Senior Scientist, ImClone Systems, a wholly owned subsidiary of Eli Lilly Company 180

Re: [PyMOL] stick transparency

2010-05-21 Thread Ariel Talavera
Yes, it happen the same when setting other properties as you mentioned. Ariel On Fri, 2010-05-21 at 11:40 -0500, Matthew Franklin wrote: (I'm putting this back on-list) That's too bad. It worked for me: PyMOL 1.2r2, Windows XP. Can you set other properties of this object: color,

Re: [PyMOL] stick transparency

2010-05-21 Thread Ariel Talavera
Hi again, Actually it seems that for some reason the comma after the value (0.5) invalidate the command line. Ariel On Fri, 2010-05-21 at 11:40 -0500, Matthew Franklin wrote: (I'm putting this back on-list) That's too bad. It worked for me: PyMOL 1.2r2, Windows XP. Can you set other

Re: [PyMOL] stick transparency

2010-05-21 Thread Michael Zimmermann
Sorry, I didn't mention that I use 1.2r1 on xinXP It could be a version difference if the command does not work correctly for you. On Fri, May 21, 2010 at 11:50 AM, Ariel Talavera talav...@cim.sld.cuwrote: Hi again, Actually it seems that for some reason the comma after the value (0.5)