Re: [PyMOL] Selecting subsequence in PyMol

2010-12-09 Thread Keitaro Yamashita
It's very useful. How about RNA/DNA sequence? Thanks in advance, Keitaro 2010/12/10 Jason Vertrees : > Hi Julio, > >> I'm using PyMOL 1.3 and I would like to select one specific part of the >> molecule based on a peptide sequence that it is presented in protein. Is >> there any way to select sub

Re: [PyMOL] Selecting subsequence in PyMol

2010-12-09 Thread Jason Vertrees
Hi Julio, > I'm using PyMOL 1.3 and I would like to select one specific part of the > molecule based on a peptide sequence that it is presented in protein. Is > there any way to select subsequences in PyMOL? > > Protein sequence: > > ...SMVADLTQATFTKEGKTQKVVDVLDHDYVFDTFFK... > > Peptide: > > GKTQK

[PyMOL] Selecting subsequence in PyMol

2010-12-09 Thread Julio Cesar da Silva
Good afternoon, I'm using PyMOL 1.3 and I would like to select one specific part of the molecule based on a peptide sequence that it is presented in protein. Is there any way to select subsequences in PyMOL? A fictitious example: Protein sequence: ...SMVADLTQATFTKEGKTQKVVDVLDHDYVFDTFFK... Pep

[PyMOL] Disappearing right-hand control panel

2010-12-09 Thread Bradley Hintze
Hi, I'm using pymol 1.3 and I have a pml script. when I do a show as command the right-hand column disappears. I appears again if i puch escape to access the command line. Anyone have any idea what is going on here? Bradley -- Bradley J. Hintze Graduate Student Duke University School of Medicin

[PyMOL] APBS in PyMOL

2010-12-09 Thread 耿存亮
Dear PyMOL users, I want to compute electrostatic with APBS plugin, and I create PQR file in http://pdb2pqr-1.wustl.edu/pdb2pqr/ . When I run APBS in PyMOL, it displays the errors as followed: " Could not find pymol-generated.dx so searching for pymol-generated-PE0.dx ObjectMapLoadDXFile-Error: Un