[PyMOL] color surface by bfactor discrepancy between range reported on shell and range used

2011-07-05 Thread hari jayaram
Hi, I am using svn pymol rev 3953 on a 64 bit Ubuntu box. I have a custom script that maps extent of conservation into the b-factor record of a pdb for visualization. I noticed a small feature in pymol My protein atoms in chain A have b-factors from 0 to 11 to indicate conservation extent , .

Re: [PyMOL] color surface by bfactor discrepancy between range reported on shell and range used

2011-07-05 Thread Jason Vertrees
Hi Hari, I am using svn pymol rev 3953 on a 64 bit Ubuntu box. I have a custom script that maps extent of conservation into the b-factor record of a pdb for visualization. I noticed a small feature in pymol My protein atoms in chain A have b-factors from 0 to 11 to indicate conservation

Re: [PyMOL] color surface by bfactor discrepancy between range reported on shell and range used

2011-07-05 Thread hari jayaram
Hi Jason Thanks for your detailed reply and for pointers on the iterate command for mapping the bfactors. I think I understand whats going on and there was a fault in my understanding i.e I was wrong. Even though my script puts the conservation record as b-factor to all atoms of any given