Hi Joel,
The preset commands make changes that are sometimes undoable. In this
case, PyMOL sets "cartoon_side_chain_helper" on a selection and then
deletes the selection. To do what you want, you need to perform the
actions in the command without the cartoon_side_chain_helper setting:
# fetch an
Hi folks/Jason,
I have been playing with PyMOL again lately for teaching and have noticed that
when you run the menu command Action>preset>ligand site >cartoon which looks
great... if there are any H-bonds with a protein chain amide carbonyl, then the
carbonyl is not displayed. If you use "Show
Hi Martin,
I talked with Warren about this a few years ago. He said it's
minimizing geometric constraints, but nothing more than that. So, it's
just a quick-and-dirty geometry minimizer.
Cheers,
-- Jason
On Wed, Aug 3, 2011 at 5:16 PM, Martin Hediger wrote:
> Dear List
> Is there any other inf
