Hi,
I have generated isopotential surfaces for a protein that completely
enclose the basic structure using the APBS plugin.
I can increase the transparency so I can visualize an underlying
cartoon representation of the structure.
However, when I do a ray tracing to get
Hi Warren,
What commands did you use? I just tested the following on PyMOL
v1.5.0.4 and everything worked as advertised:
fetch 1rx1, async=0
fetch 1rx1, type=2fofc, async=0
isosurface mySurf, 1rx1_2fofc, 1.0, (organic)
orient organic
set transparency, 0.5
ray
Can you try the above code and let
