BTW, there is an easy option to make cmd.fab() to pick the fragments from
an alternative location? (just to avoid modifying the original fragments
files)
thanks,
Osvaldo.
On Fri, Oct 11, 2013 at 12:32 AM, Osvaldo Martin wrote:
> Ok, I will try editing those files.
>
> Cheers,
>
> Osvaldo.
>
>
>
Ok, I will try editing those files.
Cheers,
Osvaldo.
On Fri, Oct 11, 2013 at 12:12 AM, Jason Vertrees <
jason.vertr...@schrodinger.com> wrote:
> Hi Osvaldo,
>
> This isn't built in yet. But, if you need to do that, you can edit the
> Python picked files found here:
>
> pymol/data/chempy/fragme
Hi Osvaldo,
This isn't built in yet. But, if you need to do that, you can edit the
Python picked files found here:
pymol/data/chempy/fragments
Cheers
-- Jason
On Thu, Oct 10, 2013 at 2:41 PM, Osvaldo Martin wrote:
>
> I am using the comand cmd.fab() to create small peptides. There is an easy
Hi Mike,
We didn't implement the equals operator, but the less than and greater than
operators are strict comparisons so you can do the following:
select my_exact_b, not (b<0.5 or b>0.5)
Cheers,
-- Jason
On Thu, Oct 10, 2013 at 9:34 PM, Osborne Michael <
michael.osbo...@umontreal.ca> wrote:
Hello Pymolers
I think this is an easy one, but I can't seem to get this to work.
I'd like to select residues with a bfactor equal to a certain value, say 0.
However something like:
select aa, b = 0
does not work
although
select aa, b > 0.5
does work.
Cam someone show me how to do this?
Cheers
Mi
Dear Pymol Users,
While I am trying to make a movie that contains morph, a gradual zoom-in
view of active site, and rotation, I don't know how to put all these things
together as a movie. The morph part is an object with multiple states, and
the zoom-in view follows the last state of morph object
I am using the comand cmd.fab() to create small peptides. There is an easy
option to add neutral aminoacids? The default behaviour is to add charged
amino acids with the charge of the free amino acid in solution at pH = 7
i.e. Lys and Arg protonated and Glu, Asp and His unprotonated.
Thanks in adv
Congratulations to both of you, Tsjerk and Jared!
Cheers,
Thomas
On Oct 9, 2013, at 4:46 PM, Jason Vertrees
wrote:
> Greetings PyMOL users worldwide,
>
> Please join me in congratulating Tsjerk Wassenaar and Jared Sampson on
> their recent appointments as Warren L. DeLano Memorial PyMOL Open
Hi Joel,
You don't mention it, so: Have you looked at
http://pymolwiki.org/index.php/3d_pdf ?
Best
Folmer
2013/10/10 Joel Tyndall
> Hi folks,
>
> ** **
>
> The problem is with “my” memory, not the hardware kind. I am trying to
> remember the name and the relevant webpages to access/ lear
