Dear Chandan,
I think you want to use the "move" command (
http://pymolwiki.org/index.php/Move) which moves the camera around the
molecule, instead of the "rotate" command (
http://pymolwiki.org/index.php/Rotate) which alters the coordinates of the
object you are looking at.
Hope this helps
Folm
Dear PyMOL users,
I want to rotate/revolve the loaded structure. The cell parameter should
also rotate.
I am aware of rotate command.
eg. rotate X, 90.
But when I view the cell. The rotation does not happen here.
My purpose is to generated a snapshot showing the boundaries.
How can this be achei
Thanks its there in "layer2/AtomInfo.c"
On Tue, Nov 12, 2013 at 12:16 AM, Thomas Holder <
spel...@users.sourceforge.net> wrote:
> Hi Neshatul,
>
> have you looked at AtomInfoAssignParameters in layer2/AtomInfo.c ?
>
> Cheers,
> Thomas
>
> On 09 Nov 2013, at 17:17, neshat haq wrote:
>
> > Can
Hi Neshatul,
have you looked at AtomInfoAssignParameters in layer2/AtomInfo.c ?
Cheers,
Thomas
On 09 Nov 2013, at 17:17, neshat haq wrote:
> Can anyone tell where can I get the default values of van der wall radii (or
> other radii) used in pymol, for atoms and combinations of atoms, like
>
Hi Neshatul,
# print out the vdw values used for a given selection
iterate my_selection, vdw
Use alter to change the values:
alter my_selection, vdw=vdw+2.0
Cheers,
--Jason
On Sat, Nov 9, 2013 at 4:17 PM, neshat haq wrote:
> Can anyone tell where can I get the default values of van der wall
Hi Jerome,
fetch 1nmr, discrete=1, async=0
as ribbon
set all_states
for x in range(cmd.count_states()): cmd.color(str(x), "state %s" % x)
You can substitute the spectrum command for the color command.
Cheers,
--- Jason
On Sat, Nov 9, 2013 at 8:54 PM, Jerome BENOIT wrote:
> Hello List,
>
> is
James,
What you want is something like SCWRL from the Dunbrack Lab. Minimization will
not get a sc out of an incorrect rotomer, and will not repack the protein in
the case of multiple mutations, SCWRL will. It can be downloaded for academic
use from here:
http://dunbrack.fccc.edu/SCWRL3.php/