Hi Ahmet,
could be a shader problem (missing support by your graphics driver). Try:
PyMOL set cylinder_shader_ff_workaround
(see http://pymolwiki.org/index.php/Cylinder_shader_ff_workaround )
or:
PyMOL set use_shaders, 0
Cheers,
Thomas
On 22 Dec 2013, at 00:39, Ahmet yıldırım
Hello all,
I installed pymol from source to my mac. At first I can invoke pymol from
terminal without any problem. But after a few days, if I invoke pymol from
terminal the Tcl/Tk GUI does not show up any more.
Does anyone know about it? Thanks.
Li
--
Xue, Li
Post-doctoral Research Associate
this works for me when testing using PDB ID code 4GRV (and others). Can you
test this PDB ID with your setup to see if it works? The unknown variable here
is your pdb file, possibly something is odd about it or something might be
wrong with PyMOL as Thomas has indicated. If PDB ID code 4GRV
Hi Ahmet,
On 22 Dec 2013, at 12:17, Ahmet yıldırım wrote:
Pymol show them as a sticks but they are very similar. How can I color each
residue with different colors?
if you have incentive PyMOL 1.6, you can use the spectrum command to color by
residue type:
PyMOL spectrum resn
With older
