[PyMOL] Colorbyrmsd

2014-02-06 Thread Monica Mittal
Hi all I run the colorbyrmsd.py script for my PDBs. Since they are highly similar only a few regions were colord red as compared to the rest blue molecule. But I just wanted to ask can I get the RMSD scale for the colorbyrmsd script as I may want to change the scale and recolor the PBDs. Thanx in

Re: [PyMOL] Yaw, Pitch and Roll of CGO

2014-02-06 Thread Thomas Holder
Hi Pawel, have you tried using the camera=0 argument? cmd.rotate(axis, angle, object='yourcone', camera=0) Cheers, Thomas On 05 Feb 2014, at 15:46, Павел Томашевский croov...@gmail.com wrote: Hello I've made a cone CGO (something like a pointer) and now I need to make a rotation of the

Re: [PyMOL] Colorbyrmsd

2014-02-06 Thread Thomas Holder
Hi Monica, that script does in the end: cmd.spectrum('b', 'blue_red', seleboth + ' and b -0.5') so simply run the spectrum command again with minimum and maximum arguments. PyMOL spectrum b, blue_red, b -0.5, minimum=0, maximum=3.0 Hope that helps. Cheers, Thomas On 06 Feb 2014, at