Hi All,
I have installed PyMol by terminal
sudo apt-get install pymol
on my Ubuntu14.04 but it is very slow.
Please can you tell me if it can be supported by my PC?
Memory 7.7 GiB
Processor Intel Core i5CPU 650@ 3.20GHz X 4
Graphics Gallium 0.4 on NV86
OS-Type 64-bit
And here is what is written
Hi Pymolers,
I have some Python script that I would like to run on Pymol in the
batch mode. To do this, I have written a "startup.py" script which I
call from Python. The script is supposed to launch Pymol and run it in
the batch mode with the "work.py" script. However, once I execute it,
Pymol qu
One possible reason for this behavior would be code that assumes atom IDs
are unique. In fact, both the ID and the state are required to uniquely
identify an atom. This would be consistent with some other problems I've
observed when working with multi-state objects, such as the fact that
cartoon re
Thanks for the response, David!
You can fetch biological assemblies from the PDB using `fetch PDBID,
type=pdb1` (or the PDB Loader Service plugin). This gives you the proper
oligomeric state, rather than just the asymmetric unit. However, since it
can potentially have chains from multiple asymmetr
Dear Pymol users!
Typically when I'm looking at the ligand binding sites (present->show of
the receptor-ligand.pdb complexes all receptors non-canonical residues or
the different titrable forms of the standard ones (e.g HIP-protonated HIS
or ASH- protonated ASN) are recognized as the ligands as we
