Hi Carsten & Albert,
There actually is a function for getting the coordinates of a single atom.
Example:
PyMOL>print cmd.get_atom_coords('first (elem O)')
Cheers,
Thomas
On 25 Feb 2016, at 09:54, Schubert, Carsten [JRDUS]
wrote:
> Albert,
>
> there is no command line tool for that purpos
Albert,
there is no command line tool for that purpose per se, however you can use the
iterate command for that purpose.
http://pymolwiki.org/index.php/Iterate#Example:_Get_coordinates
There are other ways to do this but this will get you going more quickly.
-Original Message-
From: A
Hello:
I would like to know the XYZ information of a specific atom. I am just
wondering how can we do this? Is there any command line?
thank you very much
Albert
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Site24x7 APM Insight: Get Deep Visibility into Applic
Dear all,
a colleague is interested in generating an electrostatic map of a protein
containing a citrulline. Does anybody have any experience with this and
could recommend any approach?
Cheers,
Andreas
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Site24x7 APM In
Hi Amin,
It worked. Many Thanks
Cheers
Mohsen
From: a...@imtech.res.in [mailto:a...@imtech.res.in]
Sent: Thursday, 25 February 2016 10:24 PM
To: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] Alignment of two proteins
Hi. I think
align 4mt1 & chain A, 3aob & chain B
should work.
Ami
Hi. I think
align 4mt1 & chain A, 3aob & chain B
should work.
Amin.
On 2016-02-25 17:02, Mohsen Chitsaz wrote:
> Hi Julian,
>
> I have two homotrimer proteins, i.e. 3aob and 4mt1. I want to align chain A
> of 4mt1 to chain B of 3aob. How to tell Pymol to align a specific chain or
>
Hi Julian,
I have two homotrimer proteins, i.e. 3aob and 4mt1. I want to align chain A of
4mt1 to chain B of 3aob. How to tell Pymol to align a specific chain or part of
a protein, in my case chain A of 4mt1, to a specific chain or part of another
protein, in my case chain B of 3aob?
Cheers
Mo
