Re: [PyMOL] Windows PDB file for debugging pymol C extension?

Try to turn on heap verification for python.exe using the following registration key and then start pymol with `python.exe -m pymol` [HKEY_LOCAL_MACHINE\SOFTWARE\Microsoft\Windows NT\CurrentVersion\Image File Execution Options\python.exe] "GlobalFlag"="0x0200"

Re: [PyMOL] Windows PDB file for debugging pymol C extension?

Thanks -- unfortunately it seems to be heap corruption. I can see where it's detected: ntdll.dll!RtlpLogHeapFailure () Unknown ntdll.dll!RtlFreeHeap() Unknown ucrtbase.dll!_free_base() Unknown _cmd.cp36-win_amd64.pyd!VLAFree(void * ptr) Line 222 C++

Re: [PyMOL] Pymol 2.1 graphics error

On 09-May-2018 12:52, Thomas Holder wrote: Hi Andy, Does it help if you launch PyMOL with "-M"? pymol -M If not, can you be more specific about the symptoms? Is it just slow or do you get flickering, wrong rendering, crashes, etc.? Are you working directly on the machine's console or over

Re: [PyMOL] Add ACE and NME terminals

Hi Roja, This could be useful for you: 18 Nov 2017, NME and ACE capping from script https://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg14812.html I couldn't quite follow your description, which interface were you using? The "Builder" panel? The following works for me: 1) Click

Re: [PyMOL] Pymol 2.1 graphics error

Hi Andy, Does it help if you launch PyMOL with "-M"? pymol -M If not, can you be more specific about the symptoms? Is it just slow or do you get flickering, wrong rendering, crashes, etc.? Thanks, Thomas > On May 9, 2018, at 8:01 PM, Andreas Tosstorff >

[PyMOL] Add ACE and NME terminals

Hi, I'm beginner in PYMOL. I want to add ACE and NME terminals to helical poly amino acid which is made by Peptide builder. I load the poly AA pdb file to pymol. Then: Edit first (name N) Then i didn't know how to add residue so i got help from taps and select ACE. But when i used this command,

Re: [PyMOL] Windows PDB file for debugging pymol C extension?

I put a VS2015 build of svn rev 4189 including debug information files for the pymol source at Hope this helps. Christoph On 5/9/2018 7:34 AM, Gary Oberbrunner wrote: Hi; I'm running into a crash in Windows pymol, in the C

[PyMOL] Windows PDB file for debugging pymol C extension?

Hi; I'm running into a crash in Windows pymol, in the C extension part (_cmd.cp36-win_amd64.pyd) using pymol open source 2.1.0. I'd like to debug it; is there a symbol file (.pdb) available anywhere? Or failing that, can I rebuild the C extension from source and create a pdb? -- Gary Oberbrunner