Hi Vatsal,
The "min_mesh_spacing" setting only affects the "mesh" representation of
molecules (molecular surface). To increase the mesh density of an isomesh, you
need to upsample the map with the "map_double" command.
https://pymolwiki.org/index.php/Map_Double
Hope that helps.
Cheers,
Hi Vatsal,
This is how you show positive and negative contour:
fetch 1ubq, diffmap, type=fofc, async=0
isomesh diffmesh, diffmap, 3.0
color green, diffmesh
set mesh_negative_color, red
set mesh_negative_visible
Example copied from:
https://pymolwiki.org/index.php/mesh_negative_visible
Cheers,
Hi Yu and David,
I like to throw in one of the many ways to do this inside PyMOL :-)
from pymol import cmd
# load 3000 files into the "multi" object
for i in range(3000): cmd.load('file_{}.pdb'.format(i + 1), 'multi')
# if you want, fit to the first state
cmd.intra_fit('multi')
Morphing between
