[PyMOL] How to show the boundary of each selected residues in surface presentation with pymol

2019-05-15 Thread sunyeping via PyMOL-users
Dear everyone, It there a way to show the boundary of each selected residues in surface presentation with pymol? Best regards Arthur___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe:

Re: [PyMOL] How to make protein blur but keep ligand clear?

2019-05-15 Thread Thomas Holder
Hi Arthur, The origin of rotation will become the focal point. So all you have to do is: PyMOL> origin resn DUD The blur will look better if you increase the sample size, e.g. samples=20. Cheers, Thomas > On May 15, 2019, at 9:50 AM, sunyeping via PyMOL-users > wrote: > > Dear all, > >

[PyMOL] How to make protein blur but keep ligand clear?

2019-05-15 Thread sunyeping via PyMOL-users
Dear all, I have a protein-ligand complex and I wish to make the protein looks blur but keep the ligand clear and sharp with pymol. I find a "focalblur" script (https://pymolwiki.org/index.php/FocalBlur) which seems to be able to do this. However I can get the fancy effect illustrated in the