try as I might I cannot get quad buffered stereo to work in pymol since
version 2 was released. Tried up to 2.3.
My emitter does not even switch on.
pymol 1.8.6 is still good to go in stereo mode, so whats happened? Has
stereo been dropped in version 2?
using nvideo control panel and real D
hich hopefully will resolve the issue for you. It will allow you to
> fit the window back onto the screen after resizing.
>
> # pymolrc:
> cmd.viewport(1350, 950)
> cmd.window('fit')
>
> A pre-release build of PyMOL 2.1 is available here:
> https://pymol.org/alpha/
>
> C
My pymolrc file contains a line: viewport 1350,950
which nicely fills my screen when I start pymol 1.8. However in pymol2 the
screen has the correct dimensions but the whole thing is offest to the
right and down. What should be the top left corner of the window is placed
about a quarter of the way
Is there a way (easy) to make a movie featuring a translation of one
molecule?
So far I have found I can only do it using the mset, mview commands and its
difficult to put a lot of animations together. translations (positions of
moleules/objects) do not sem to be recorded using scenes.
Am I
To avoid confusion (mine) can you please specify whether or not Quadro
cards are still necessary for stereo on Windows systems.
Will a GeForce card (not quadro) support nvidia nvision 3D ?
I remember a recent post concerning this but cant seem to find it.
Gary Hunter
--
Prof. Gary J. Hunter
, 26 June 2013 21:53
To: Gary Hunter gary.hun...@um.edu.mt
Cc: Thomas Holder thomas.hol...@schrodinger.com,
pymol-users@lists.sourceforge.net pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] Anaglyph colours sorted (kind of)
Hi Gary,
1) do not use a black background
Agreed. Something like
are 3 (half-color) and 1 (gray).
http://pymol.org/dsc/dokuwiki/doku.php?id=setting:anaglyph_mode
If you really need to change the colors, you could take the open-source
code and tweak the anaglyph_mode matrix in layer1/Scene.c
Hope that helps.
Cheers,
Thomas
Gary Hunter wrote, On 06/17/13 09:53
Is there a way to customise the colours used in anaglyph stereo mode?
Anaglyph mode has been optimised for green/magenta glasses but I have lots
of red/cyan ones so I'd like to change the colours used if I can.
Gary
Prof. Gary J. Hunter,
Department of Physiology and Biochemistry
University
I am displaying pdb files of metalloenzymes, and like to show the metal ions
as spheres.
I select the metal and use showspheres
Fine
Somehow recently I must have done something to reset the vdw radius of
manganese (MN in the pdb), as Mn atoms now display as small spheres (a
little larger than
Dear all
I made a structural alignment using CE on-line resources (I cant get the
plugin etc to work in pymol !)
The output is a pdb file with two model structures (also designated chains A
and B respectively).
Pymol reads in the sequences fine, I can display the chains and select them,
but I can
Does anyone still have the software / scripts required to make SGI dials box
work with Pymol?
I found an old thred back in 2004 but all the links are dead.
Dials may not be necessary, but as I have some lying around doing nothing,
I¹d very much like to apply them to Pymol (especially as my SGI has
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