Hi guys
Is there a method to detect superficial hydrophobic regions?
Thank you!
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Hi guys
Please, how to show a full viral capsid in PyMol as seen below?
Reovirus capsid: https://www.rcsb.org/3d-view/1EJ6
Thank you!
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That's a +1 from me here. Good idea.
Cheers,
JJ
On Tue, Feb 2, 2010 at 8:49 PM, Jason Vertrees
jason.vertr...@schrodinger.com wrote:
Hi all,
So, after updating APBS (pushed to SourceForge) with Michael Lerner, I
went ahead and built CEalign into PyMOL. I haven't pushed that code
Hello.
I have just installed version 1.0r2 from svn on a
brand new AMD Fedora 8 64-bit machine and it installed
without error. However, when I try to run pymol I get
the same startup error that I had received some time
ago on a different machine (the earlier problem seemed
to fix itself for
Thanks Warren, the trunk version worked perfectly.
John
--- DeLano Scientific del...@delsci.info wrote:
Anyway, building the open-source code from trunk is
an immediate solution
for running PyMOL Python 2.5 in 64-bit mode under
Linux.
Hello:
I have a strange crash problem with pymol. I've had
the 64 bit version 1.0r2 installed on two Fedora 8
machines for several weeks and up until yesterday or
so everything was working just fine. Now pymol will
not start on either machine. Here is the error:
python: Modules/gcmodule.c:276:
Hello:
Im new at pymol and would like to obtain the
coordinates of the dots that make up the
solvent-accessible surface. I can obtain the vertices
using cmd.get_povray()[1], but that will give me a
list of coordinates of open cylinders with spheres at
either end. Perhaps these sphere and
From: Robert Campbell robert.campb...@qu... -
2007-11-22 21:56
Rather than use PyMOL's surface, I've used the
triangulated surface output
by Michel Sanner's msms program.
Thanks much Rob. Can you please tell me why it might
be better to use msms to calculate surface points
rather than the
From: JJ josh8...@ya... - 2007-11-22 20:36
Hello:
Im new at pymol and would like to obtain the
coordinates of the dots that make up the
solvent-accessible surface.
I should have also asked in my original post, is there
a way in pymol to determine the solvent-accessible
surface for a particular
