, October 21, 2020 5:54 AM
To: Jeff Saxon
Cc: pymol-users
Subject: Re: [PyMOL] [EXTERNAL] png command in Educational Pymol
I think you can superimpose the name externally after the image is produced
using GD libraries of python.
Also I am not sure that Pymol labels could help,
https
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From: Saurabh Gayali [saurabh.gay...@gmail.com]
Sent: Wednesday, October 21, 2020 5:54 AM
To: Jeff Saxon
Cc: pymol-users
Subject: Re: [PyMOL] [EXTERNAL] png comma
I think you can superimpose the name externally after the image is produced
using GD libraries of python.
Also I am not sure that Pymol labels could help,
https://pymolwiki.org/index.php/Label
---
I also have a question.
I am also trying to achieve something similar, but with docking output
f
Right, thank you! just tested it with the recent Pymol version.
one question - is there any way to plot the name of the loaded pdb on
the image (produced by PNG command) in some automatic fashion (it
could be useful when I use it directly from terminal, without GUI)?
вт, 20 окт. 2020 г. в 14:46, T
See last question here ("Ray tracing does not work"):
https://pymol.org/edu/faq.php
Cheers,
Thomas
On Tue, Oct 20, 2020 at 1:18 PM Mooers, Blaine H.M. (HSC)
wrote:
>
> Hi Jeff,
>
> I have the incentive version of PyMOL.
> It too is saving draw images with ray tracing when using the batch mode
Hi Jeff,
I have the incentive version of PyMOL.
It too is saving draw images with ray tracing when using the batch mode and
also when using the pymol api in Jupyter.
As you report, saving a draw image from inside PyMOL works.
This is a very annoying bug.
You should report it as an issue on the P
Hi Blaine,
I've just checked on trial 26 day version of Pymol it use always RAY=1
while I run pymol from script regardless of ray flag (tested with
ray=1, ray=0, without ray as in you case etc :-)
I am going to try open source pymol!
Cheers,
J
вт, 20 окт. 2020 г. в 12:39, Mooers, Blaine H.M. (HSC)
Hi Jeff,
I do not know the answer to your question. This is a work around.
Try dropping ray=0 and adding the draw command with the dimensions in pixels
(width, height).
cmd.draw(1600,1600);cmd.png('test1600.png')
I would not use the Educational PyMOL for the kind of serious work that you are
t
