Re: [PyMOL] Averaging a pdb file

Hi Neshatul, try "spheroid": PyMOL> fetch 1nmr, async=0 PyMOL> spheroid 1nmr To relax locally distorted structure, you can use sculpting: PyMOL> fetch 1nmr, async=0 PyMOL> sculpt_activate 1nmr, 1 PyMOL> spheroid 1nmr PyMOL> set sculpting, 1 # ... until you like it PyMOL> set sculpting, 0 Hope

[PyMOL] Averaging a pdb file

How can we convert a 10 structure in apdb file to an approximate average. Is there any plugin or tool? I once tried average3d.py from mura lab but that average structure is duplicate of the first structure we opt. Anyways any suggestion will be appriciated. -- Best regards Neshatul Haque PhD, Dp