Hi Ritu,
do I understand correctly that resi 3-9 are *not* in helix conformation,
and you want to perform a modelling task? Altering the ss property is
not sufficient, that's just an annotation and not a modelling
constraint. PyMOL is primarily a visualization tool and less a modelling
tool,
Hi All,
I'm trying to change a stretch of a polypeptide chain (residues 3-9) into a
helix. I use the alter command:
alter 3-9/, ss='H'
But when I try to see the updated structure in cartoon, the structure doesn't
appear like a helix. It looks like a distorted helix. How do I correct it?
