Re: [PyMOL] Electron density map color

2019-05-03 Thread Thomas Holder
Hi Vatsal, This is how you show positive and negative contour: fetch 1ubq, diffmap, type=fofc, async=0 isomesh diffmesh, diffmap, 3.0 color green, diffmesh set mesh_negative_color, red set mesh_negative_visible Example copied from: https://pymolwiki.org/index.php/mesh_negative_visible Cheers,

[PyMOL] Electron density map color

2019-04-27 Thread Vatsal Purohit
Hello, I've been trying to color my Fo-Fc electron density maps in pymol with the positive Fo-Fc maps showing as green and negative Fo-Fc maps showing as red and having no luck with it. They either show up as red or green. I generate my maps by converting .mtz from phenix to .ccp4 files on ccp4.