indeed, the SITE records could easily be parsed and made available as
named selections.
Similar: http://pymolwiki.org/index.php/Uniprot_features
- makes named selections from uniprot annotations
Cheers,
Thomas
Nat Echols wrote, On 07/13/12 23:24:
On Fri, Jul 13, 2012 at 2:12 PM, Jason
Dear Pymolers.
Thanks for all the suggestions. :-)
I definitely think that http://jolecule.appspot.com can become handy for a
teaching situation
or sending a colleague a question to a protein. Thanks!
And I am all in for interactive publications, which I hope could use one
day.
The
Once again Thomas Holder have done a very nice work, and made a solution.
Check it out here:
http://www.pymolwiki.org/index.php/Select_sites
fetch 1sgt, async=0import select_sites
select_sites
It works really brilliant.
Best
Troels Emtekær Linnet
2012/7/14 Troels Emtekær Linnet
Dear PyMolers.
Reading crystallographic papers, and feeling the
need for seing a papers annotation and explanation of important residues,
I often have pymol at my hand.
fetching the protein, and typing in commands to see the mentioned residues.
That is time-consuming, but okay.
Inspired by John
Hi. Not too long ago, Bosco Ho put together something like that in HTML5
http://jolecule.appspot.com/
cheers,
wlad
On Jul 13, 2012, at 6:41 AM, Troels Emtekær Linnet wrote:
Dear PyMolers.
Reading crystallographic papers, and feeling the
need for seing a papers annotation and
Troels,
It would be nice if publishers required a common CSV format for
specifying contacts and annotations. Then we could easily pull the
data from reliable resources. But, alas, this doesn't exist.
Cheers,
-- Jason
On Fri, Jul 13, 2012 at 5:41 AM, Troels Emtekær Linnet
tlin...@gmail.com
On Fri, Jul 13, 2012 at 2:12 PM, Jason Vertrees
jason.vertr...@schrodinger.com wrote:
It would be nice if publishers required a common CSV format for
specifying contacts and annotations. Then we could easily pull the
data from reliable resources. But, alas, this doesn't exist.
One possible
The main technology I've seen used for interactive publications is ActiveICM
(see http://www.molsoft.com/activeicm.html#aipub ). In my lab, we regularly
include pymol sessions as supplementary material to help people understand our
results.
-David
On Friday, July 13, 2012 at 6:41 AM, Troels
