Re: [PyMOL] POVRAY Usage

2009-05-18 Thread Thomas Stout
ject: Re: [PyMOL] POVRAY Usage Hi Tom, Just as Robert says, the quote should be dropped. Maybe you should've had just one coffee more, but I should also have been more careful typing. Apparently I usually automatically start of with typing strings after .write( ;) Sorry about that. Tsjer

Re: [PyMOL] POVRAY Usage

2009-05-16 Thread Tsjerk Wassenaar
at would be more obvious if I had had more coffee > today? > > Thanks! > -Tom > > PS - There was a missing quotation mark: > open("povray.inc","w").write("cmd.get_povray()[1]) --> > open("povray.inc","w").write("cmd.get_povray()[1]"

Re: [PyMOL] POVRAY Usage

2009-05-15 Thread Robert Campbell
Hi Tom On Fri, 15 May 2009 14:57:36 -0700, Thomas Stout wrote: > What version of PyMOL does this work with? I've been trying your commands > with versions 1.1 and 1.2b and while PyMOL reports that the primitives have > been processed, nothing is written to the file "protein.pov" other than the

Re: [PyMOL] POVRAY Usage

2009-05-15 Thread Thomas Stout
.write("cmd.get_povray()[1]) --> open("povray.inc","w").write("cmd.get_povray()[1]") -Original Message- From: Tsjerk Wassenaar [mailto:tsje...@gmail.com] Sent: Thu 5/14/2009 1:47 PM To: Sean Law Cc: pymol-users Subject: Re: [PyMOL] POVRAY Usage Hi Sean, Unfortun

Re: [PyMOL] POVRAY Usage

2009-05-14 Thread Tsjerk Wassenaar
uld be two axis vectors (according to the povray website) but you've only > specified one.  Should I just repeat the same axis twice? > > Sean > > >> Date: Thu, 14 May 2009 22:47:54 +0200 >> Subject: Re: [PyMOL] POVRAY Usage >> From: tsje...@gmail.com >> T

Re: [PyMOL] POVRAY Usage

2009-05-14 Thread Tsjerk Wassenaar
Hi Sean, Unfortunately, getting a good image through POV-Ray requires editing the POV-Ray file. You can write the scene to disk with the following commands pov=open("protein.pov","w") pov.write(cmd.get_povray()[0]) pov.write("#include \"povray.inc\"") pov.close() open("povray.inc","w").write("cm

[PyMOL] POVRAY Usage

2009-05-14 Thread Sean Law
Hi All, While ray tracing a scene with 10 x-large proteins in grid mode at 3600, 3600 (width, height) I ran out of RAM (2 GB). I tried it again by writing everything into a script and using pymol -qc which still ran out of memory. I read somewhere that POVRAY is less of a memory hog so I ins