Neshat,
Warren wrote the surfacing algorithm years ago. A little more discussion on
the algorithm can be found here (
http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg07124.html)
and here (http://www.pymolwiki.org/index.php/Get_Area).
Cheers,
-- Jason
On Tue, Nov 12, 2013 at
Hi,
I could not find the the algorithm by which pymol calculates the solvent
ASA.
What I understood is that pymol adds the vdw radii of atom and probe, makes
the sphere around the center of selected atoms, puts some dots and
according to the density of dots it calculates the SASA.
or it simply
