Dear Jason,
I know there are many residue naming of RNA/DNA depending on what
software is used.
(for example, Adenine: ADE, A, Ar, Ad,... )
I hope PyMOL would support any naming!
Thanks,
Keitaro
2010/12/11 Jason Vertrees :
> Hi Keitaro,
>
> Code has been started for "nucseq" and the shorthand
Hi Keitaro,
Code has been started for "nucseq" and the shorthand "ns.". I think
it was not completed because at first glance it appears less than
straightforward: "ps." searches for the one-letter residue names, but
"ns." would have to map one-letter codes to those commonly used in the
data, "DA"
It's very useful.
How about RNA/DNA sequence?
Thanks in advance,
Keitaro
2010/12/10 Jason Vertrees :
> Hi Julio,
>
>> I'm using PyMOL 1.3 and I would like to select one specific part of the
>> molecule based on a peptide sequence that it is presented in protein. Is
>> there any way to select sub
Hi Julio,
> I'm using PyMOL 1.3 and I would like to select one specific part of the
> molecule based on a peptide sequence that it is presented in protein. Is
> there any way to select subsequences in PyMOL?
>
> Protein sequence:
>
> ...SMVADLTQATFTKEGKTQKVVDVLDHDYVFDTFFK...
>
> Peptide:
>
> GKTQK
Good afternoon,
I'm using PyMOL 1.3 and I would like to select one specific part of the
molecule based on a peptide sequence that it is presented in protein. Is there
any way to select subsequences in PyMOL?
A fictitious example:
Protein sequence:
...SMVADLTQATFTKEGKTQKVVDVLDHDYVFDTFFK...
Pep
