Hi Emily,
No, it takes them from the selection.
Cheers,
Tsjerk
On Jul 7, 2015 4:09 PM, "Emilia C. Arturo (Emily)" wrote:
> To be extra clear/redundant:
> >
> > The default value passed is None. If Pymol finds that the argument is
> None,
> > it takes the minimum/maximum value from the list of
To be extra clear/redundant:
>
> The default value passed is None. If Pymol finds that the argument is None,
> it takes the minimum/maximum value from the list of values,
...do you mean that it takes the minimum/maximum values from the list
of b-values from within that pdb file? So that for each p
Hi Emily,
The default value passed is None. If Pymol finds that the argument is None,
it takes the minimum/maximum value from the list of values, otherwise it
will take the value provided. The interpolation is indeed linear.
Hope it helps,
Tsjerk
On Tue, Jul 7, 2015 at 4:11 AM, Emilia C. Arturo
Hello All.
Can anyone tell me what values are assigned by default to the minimum
and maximum arguments of the spectrum command? To be clear, I know how
to change the value of these arguments, but what does PyMOL assign to
these values if one calls the spectrum tool using the pull-down menus
to col
Dear Pymol Users,
I'm creating dashes between atoms via the distance command. So far I have
always indicated the size of the distance simply by the label that pops up
automatically with the distance command.
I was wondering however whether it is actually possible to also colour dashes
accordin
Hi Sean,
On Mon, 09 Nov 2009 10:58:53 -0500 Sean Law wrote:
>
> Robert,
>
> I would have to agree with you. I've used many of your scripts and have
> also learned a lot from them and think that the color B script is pretty
> robust and helpful.
Thanks.
> I could be wrong but I remember the
Robert,
I would have to agree with you. I've used many of your scripts and have also
learned a lot from them and think that the color B script is pretty robust and
helpful.
I could be wrong but I remember the original poster commenting about using the
"min & max" settings from the spectrum c
Hi Mark and Sean,
On Sat, 07 Nov 2009 10:05:59 -0500 Sean Law wrote:
> Sorry for the earlier confusion. I think I found a hackish way of getting
> a gray spectrum:
I know I'm biased, since I wrote the color_b.py script, but I fail to see what
is difficult about typing:
color_b "selectionna
Mark,
Sorry for the earlier confusion. I think I found a hackish way of getting a
gray spectrum:
To specify a particular color spectrum you need to know the language of the
spectral ranges. These ranges are discussed briefly in the PyMOL-Wiki
(spectral range colors):
http://www.pymolwiki.o
Hi All
Is there a way to set a user defined "string palette". I'd like to
generate a grey to red(or any other color of my choice) and a full grey10
to grey90 spectrum. I have used the color_b script but the min/max
setting of the spectrum command are easier for adjusting the scaling.
Thanks
Dear all,
i would like to color a molecule according to its partial charge. i used
spectrum partial_charge, rainbow, selection=test
without any success, although
spectrum b, rainbow, selection=test
works just fine. are the properties that can be selected limited to b-factor
(b) and occupancy
Hi all,
I have a question regarding the spectrum command and b-factors. How are
the color-ranges calculated by "spectrum"?
I.e. i would like to know the values for the different shades like in
the color_b.py-script, which gives you not only a total range, but also
the bins.
I would like to
Hi folks:
Why is "spectrum" and the internal gui (which I assume invokes
"spectrum") so much faster than util.rainbow ?
I like the util.rainbow default color scheme a bit better, but it takes
forever for large complexes. Is there a simple way to get spectrum
to mimic the rainbow color schem
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