> > Yes, if you use the distance command ("dist" for short).
>
> > load $TUT/1hpv.pdb
>
> > dist dist01, A/14/CA, A/20/CA
>
> > dist dist02, A/29/CA, A/46/CA
>
> > etc.
>
> Yes, but in this way two object are created, dist01 and
> dist02. The question is how to join both object (or more if
Hello pymol-users,
I would like to know if there is any way to create an unique object
containing different distances. I have some distances and I want to
group them in only one object. Using the command "create" always
give me an error on the selection. I have no problem doing the same wi
I am working on a python function that devides a structure into objects
containing residues with certian properties. When I do a cmd.create on a
large string (resid 1 or resid 3 or ...) pymol crashes with a
segementation fault. Is there any way to add resides to an object?
Instead I got the br
Cameron
> This reminds me of a related question I once had -- does
> anyone know if there's a way to create selections based
> loosely (and very generally) on bond connectivity criteria,
> in a somewhat similar manner as specified in force fields
> used for proteins. It would be neat to be a
Hi ,
Rather than using atom selection macros (/1jff//a/etc.../), the easiest
way is probably to execute the following command, which takes advantage
of PyMOL's built-in "hetatm" single-word selector:
select just_protein, ! hetatm
The "hetatm" selector consists of all atoms from the PDB fi
Hi Hanspeter,
If you want to use a stock pdb that does not contain chain IDs, you should
create
the object using either a residue or atom selection. For example
(using residue ids for kinesin)
create kin=(/1BG2///3:325/)
However, for your convenience I've attached a modified pdb that
contains dif
I'm trying to create an object of a protein from a PDB file that doesn't
give a chain ID (pdb is 1BG2).
I normally do something like:
create atub=(/1jff//a/)
to pull a specific chain out of a PDB file, but 1BG2 doesn't have a chain
name. And if i use "create kin=(/1BG2)", the object kin get
