Re: [PyMOL] equals operator for q and b

2021-02-12 Thread Ali Saad Kusay
Hi Benedikt, You can do a work around with '<' or '>': Sele qm, q>0.999 and q<1.001 I checked that this works like this for my "obj" in PyMOL: stored.q = [] iterate obj, stored.q.append(q) q_arr = np.array(stored.q) q_1 = q_arr[q_arr == 1] # only keep values of q that equal 1

[PyMOL] equals operator for q and b

2021-02-12 Thread Benedikt Floeser
Dear fellow users, among other things I use pymol to edit PDB files so as to use them in an ORCA calculation. This entails changing the occupancy and B-factors to values of 0, 1 and 2. Changing these entries to the appropriate values but selecting, e.g., all atoms with a q value of 1 or 1.00