Ah, thanks for the correction, Thomas. I didn't realize the behavior was
different between the command and Python function. I guess I should have
looked into it further and not just emailed from my phone!
Cheers,
Jared
On March 29, 2018 at 6:58:41 PM, Thomas Holder
Hi Gary & Jared,
PyMOL session files do not contain any graphics geometry. Export as COLLADA or
VRML are the best options.
The cmd.fetch() function is not asynchronous by default, only the fetch command
is. This is controlled by the quiet=0 argument which is passed to all commands.
Cheers,
Thanks for the idea Jared, but no, still nothing but atoms.
On Thu, Mar 29, 2018 at 3:31 PM, Jared Sampson
wrote:
> Hi Gary -
>
> `cmd.fetch()` runs asynchronously by default, meaning `cmd.show()` might
> execute before the structure is actually loaded. Try amending
Hi Gary -
`cmd.fetch()` runs asynchronously by default, meaning `cmd.show()` might
execute before the structure is actually loaded. Try amending to:
cmd.fetch(mol_id, async=0)
Does that make a difference?
Cheers,
Jared
On March 29, 2018 at 2:18:29 PM, Gary Oberbrunner
I'm running pymol "headless" in a script. After initializing pymol and
calling finish_loading(), I do this:
cmd.fetch(mol_id)
cmd.show('spheres','all')
session = cmd.get_session()
... but my session object only includes one object, the cObjectMolecule.
I'm looking for it to include the