[PyMOL] loadDir script

2013-04-02 Thread James Starlight
Dear PyMol users! I've forced with the problem of the loading of the my structural ensemble (pdb files of the protein listed as 1.pdb 2.pdb 3.pdb ..;. 100.pdb) into pymol via loadDir.pml script. In particular after loading of my ensemble in the right contex pymol's window I want to preserve

Re: [PyMOL] loadDir script

2013-04-02 Thread Pete Meyer
Hi James, Assuming your going from the pymol wiki loadDir script; you'd need to change glob(c) loop (sort the list in your preferred order before the loop, rather than using the result list unmodified). If I'm understanding your problem correctly (numbered pdb files being loaded as 1.pdb,

Re: [PyMOL] loadDir script

2013-04-02 Thread Thomas Holder
Hi James, please try, after loading the files: PyMOL order *, yes Cheers, Thomas James Starlight wrote, On 04/02/13 19:28: Pete, thanks for suggestion. I've tried to use loadDir with the pdb's subset where each file had name like 001.pdb 002.pdb ... 055.pdb but when the sotring have

Re: [PyMOL] loadDir script

2013-04-02 Thread James Starlight
Thank you! Does it possible to include order *, yes to some pymol's setting file that the ordering be automatically each time when I load pdb ensemble? (I dont what to include it to the loadDir.pml script itself). James 2013/4/2 Thomas Holder thomas.hol...@schrodinger.com Hi James, please