I have a script for calculating principal moments of inertia and displaying
them as axes: https://github.com/sbliven/principal_axes
If you look over the code it should be pretty easy to draw the first two
axes as a cgo plane instead of as arrows.
-Spencer
On Tue, Jan 17, 2017 at 3:38 PM, Tsjerk
Hi Vitaly,
You have several options, but if the loops are nicely bent, the best is
probably doing PCA on the coordinate sets of the loops and calculate the
angle between the smallest eigenvectors.
Is that enough information? Do you insist on drawing the planes?
Cheers,
Tsjerk
On Jan 17, 2017 1
Hi
I am analyzing the dynamics of the loop and interested to define the loop
as plane. Is there is a way in the pymol, if I can define the loop as plane
and can measure the angle between these plane in different model??
Best
J. Vitali
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