RE: [PyMOL] paths in MacPyMol

2006-02-08 Thread Warren DeLano
nal Message- > From: [email protected] > [mailto:[email protected]] On Behalf Of > [email protected] > Sent: Wednesday, February 08, 2006 12:26 AM > To: Andrew Wollacott > Cc: [email protected] > Subject: R

Re: [PyMOL] paths in MacPyMol

2006-02-08 Thread andreas
Hey Andrew, On my system, open launches Graphic Converter. In any case, I have an alias defined in ~/.bashrc to start pymol: alias pymol='/Applications/PyMOLX11Hybrid.app/Contents/MacOS/PyMOL' This way, pymol test.pdb opens the pdb file in pymol, and the path is set correctly. Andreas > I

[PyMOL] paths in MacPyMol

2006-02-07 Thread Andrew Wollacott
I recently switched to MacPyMol 0.99. I frequently open a pdbfile using the command line in OsX using the "open" command. This opens up the pdbfile in macpymol. The problem is that the present working directory is not set up properly. For instance: % cd pdbfiles % open test.pdb PyMol > pwd I g