Re: [PyMOL] select atoms near electron density

2010-01-11 Thread Michael Lerner
Yes, I believe this is the case. -Michael On Sat, Jan 9, 2010 at 4:20 AM, Jason Vertrees jason.vertr...@gmail.comwrote: Michael, I don't think this is possible with PyMOL. Distance measures are calculated from objects. -- Jason -- Jason Vertrees, PhD jason.vertr...@schrodinger.com

Re: [PyMOL] select atoms near electron density

2010-01-09 Thread Jason Vertrees
Michael, I don't think this is possible with PyMOL. Distance measures are calculated from objects. -- Jason -- Jason Vertrees, PhD jason.vertr...@schrodinger.com PyMOL Product Manager Schrodinger, Inc. On Fri, Jan 8, 2010 at 7:05 PM, Michael Zimmermann micha...@iastate.edu wrote: Dear

[PyMOL] select atoms near electron density

2010-01-08 Thread Michael Zimmermann
Dear PyMol users, I wonder if anyone knows a way to select atoms that are near a region of electron density. Say I have a binding pocket in atomic detail, but the ligand binds transiently and non-specifically, so I just have an approximate electron density could for it. Is it possible to select