Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-27 Thread Mike Marchywka
From: jason.vertr...@schrodinger.com Date: Mon, 26 Nov 2012 10:37:52 -0600 Subject: Re: was: [PyMOL] Mobile PyMOL Problem and Solution/ Now: pdb or related libraries To: marchy...@hotmail.com CC: pymol-users@lists.sourceforge.net Hi Mike, I

Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-27 Thread Jason Vertrees
Mike, Although I am curious now if I had a pdb that lacks hydrogens, like I did in this case, what pymol facilities are there for adding them? Apparently you have some editing h_add object_name Type, help h_add or check out h_add on the PyMOLWiki

Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-27 Thread Mike Marchywka
From: jason.vertr...@schrodinger.com Date: Tue, 27 Nov 2012 12:37:41 -0600 Subject: Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries To: marchy...@hotmail.com CC: pymol-users@lists.sourceforge.net Mike

Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-26 Thread Jason Vertrees
Hi Mike, I was trying to figure out what to eat today so naturally I started looking for PDB libraries with food components. I was looking for garlic related chemicals when I came across this, http://molecules.gnu-darwin.org/ which seems to have many pdb files. My question I guess is,

[PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-25 Thread Mike Marchywka
I was trying to figure out what to eat today so naturally I started looking for PDB libraries  with food components.  I was looking for garlic related chemicals when I came across this, http://molecules.gnu-darwin.org/ which seems to have many pdb files. My question I guess is, what does

Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-25 Thread Thomas Holder
Hi Mike, you can fetch molecular files from any web address with the load command. Examples: File type recognized from file extension: PyMOL load http://molecules.gnu-darwin.org/html/00150001_00175000/153919/153919.pdb File type given with format argument: PyMOL load

Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-25 Thread Mike Marchywka
Date: Sun, 25 Nov 2012 23:49:26 +0100 From: spel...@users.sourceforge.net To: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries Hi Mike, you can fetch molecular files

Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-25 Thread Mike Marchywka
2012 19:00:08 -0500 Subject: Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries Date: Sun, 25 Nov 2012 23:49:26 +0100 From: spel...@users.sourceforge.net To: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL