Fetching different biological units is cool. But can I query the pdb
through PyMOL to see what biological units are associated with a pdb?
(Could look it up directly, but I like one-stop shopping.)
Thanks.
Andreas
On Fri, Aug 6, 2010 at 4:14 PM, Jason Vertrees
wrote:
> Hi David,
>
> You're
Hi David,
You're right. It's fixed now. I'll check the code in later today.
PyMOL understands the types better now and it even works across the
wwPDB servers. The PDB id "3by0" is a good test case; it has pdb,
biounits and density data.
Test out the new code with:
# let's fetch from Nihon.
se
Looking at the code around fetch, it seems pymol makes an assumption
that has annoyed me in many other pieces of software, that there is
only one biological assembly in the pdb. Lots of proteins have 2 or
more. I think I've even seen one with 6.
The second biological assembly has an extension of
Greetings,
Fetch has been fixed and the code checked into SVN with some other
changes. I'm calling this v1.3r1 because 'fetch' is so integral to
PyMOL.
For Incentive PyMOL subscribers, the new v1.3r1 builds will be
available before the weekend.
As usual please report any problems.
Cheers,
--
Hi Daphna,
The PDB servers underwent some reorganization and moved the files on
us! I will post a fix for this by tomorrow night.
Thanks!
-- Jason
On Sun, Aug 1, 2010 at 3:44 AM, Daphna Meroz wrote:
> Dear Sir/Madam,
>
> I am using MacPymol version 1.2r1. For some reason, the fetch pdb comman
