Thanks, Thomas
On Mon, Jun 3, 2013 at 9:36 AM, Thomas Holder wrote:
> Hi Robert,
>
> you got the levels right.
>
> The cmd.get method actually doesn't support querying atom level settings,
> even though you can set them with cmd.set.
>
I see. That's helpful.
>
> Atom settings are not sta
Hi Robert,
you got the levels right.
The cmd.get method actually doesn't support querying atom level settings, even
though you can set them with cmd.set.
Atom settings are not state specific, unless you have a discrete object.
Scenes do not store settings, so using spectrum_states overrides sc
For lots of image conversion/movie-making on your Windows PC --
including direct import of PNG sequences -- another piece of software to
consider is Logipole's "Konvertor" file convertor. I used this a while
ago when I was trying to go backwards from what most people are
describing here (i.e.,
Michael,
Actually, much more affordable than Premiere these days is
Quicktime Pro ($30) which can, on the Mac only (I think), directly
import a sequence PNG files from PyMOL and write out compressed
Quicktime or AVI files.
If you're tied to Windows, I don't yet know of a better
Micheal -
I'd suggest using quicktime pro. I have both adobe premiere & qtpro and found
that qtpro did a superior job with much less hassle. qtpro can produce the
sorenson encoded (mac friendly) as well as the avi format (pc&powerpoint
friendly). There is also a free package out there calle
The output format/compression really depends on the output device you plan
on delivering the final clip to. Don't go uncompressed unless you have a
killer system that can sustain NTSC and/or PAL (29.97/25fps,
respectively) frame rate. If it's for presentations and/or the web, 12
f/s is the 'stand
Hi Kristl
The problem is that the secondary structure of your protein hasn't been
defined in the PDB file. This is why the cartoon looks ike a tube. What
you need to do is type util.ss into the command line and this will
calculate some sort of secondary structure for you although it's not
that acc
Have you set your sheet and helix part in your pdb? For my personal case,
things you experienced happened when this part wasn't built.
I guess that PyMOL cannot find the secondary structures as softwares like
Rasmol can.
Try to determine your secondary structures with DSSP for example and to
paste
