Hi Seth and Jason,
I just tried out Jason's commands and while that works for this case I can't
verify that it fails in Seth's case. While checking the command line options
for create, I did notice that, like the load command, the create command also
has a discrete flag. It is not described in
Hi Seth,
When using the create command, you need to specify target and source
states. Here's an example. Let's assume 1oky and 1t46 are the same
protein (they're really close, so good for this example). They both
have ligands, 1t46 has STI and 1oky has STU. I can (1) load each
structure.
Thanks Robert and Jason
Indeed, I have different small molecules as Robert surmised and subsequent
ones affect the connectivity of the earlier ones (and representations for
some reasons, colors and spheres, etc. become unpredictable) when using the
create command. I had noted that discrete flag
On Wed, Nov 10, 2010 at 8:55 AM, Robert Campbell
robert.campb...@queensu.ca wrote:
So, you need to do:
load this_ligand, all_lig, discrete=1
load next_ligand, all_lig, discrete=1
Great point, Robert. In PyMOL when you load without specifying the
discrete flag or set it to zero, any series of
