Re: [PyMOL] symmetry operation to generate the whole virus particle

2013-02-28 Thread Folmer Fredslund
Hi Yeping, Searching for pymol biomt gives this page on the pymol wiki: http://www.pymolwiki.org/index.php/BiologicalUnit Should have all the information you need. Best regards, Folmer 2013/2/28 yp sun sunyep...@yahoo.com.cn Dear pymol users: Usually pymol can show only one chain when

Re: [PyMOL] symmetry operation to generate the whole virus particle

2013-02-28 Thread Thomas Holder
Hi Yeping and Troels, symexp is unlikely to give you the REMARK 350 biomolecule, it is for generating neighboring symmetry mates of the crystallographic packing. The following scripts from the PyMOLWiki can read REMARK 350 and generate the biological unit: http://pymolwiki.org/index.php/Psico -

Re: [PyMOL] symmetry operation to generate the whole virus particle

2013-02-28 Thread Sampson, Jared
Hi Yeping - Try using: fetch 2buk, type=pdb1, multiplex=1, async=0 This will fetch the biological assembly (type=pdb1) from the pdb, split the 60 states into separate objects (multiplex=1), and tell PyMOL to wait for all this to be completed before moving to the next command in a .pml script